150. Blazek D., M. Barboric, J. Kohoutek, I. Oven, and B.M. Peterlin. 2005. Oligomerization of HEXIM1 via 7SK snRNA and coiled-coil region directs the inhibition of P-TEFb. Nucleic Acids Res 33:7000-7010.
151 Jiang H., F. Zhang, T. Kurosu, and B.M. Peterlin. 2005.  Runx1 binds positive transcription elongation factor b and represses transcriptional elongation by RNA polymerase II: possible mechanism of CD4 silencing. Mol Cell Biol 25:10675-83
152 Medlin, J. A. Scurry, A. Taylor, F. Zhang, B.M. Peterlin and S. Murphy.  2005. P-TEFb is not an essential elongation factor for the intronless human U2 snRNA and histone H2b genes. Embo J 24:4154-65.
153 Jabrane-Ferrat, N., M. Campbell, L.J. Esserman and B.M. Peterlin. 2005. High levels of expression of MHC class II and B7.1 determinants on mammary tumor cells lead to an effective anti-cancer vaccine in the MMTV-neu ransgenic mouse.
154 Ota S., C.Sekine, T. Okamoto, B.M. Peterlin, G. Sonderstrup and S. Kanazawa. 2005. Aberrant expression of MHC class II molecules in synovial joints of mice provides a new arthritis model with extra-articular manifestations similar to rheumatoid arthritis.
155 Drozina G., J. Kohoutek, T. Nishiya and B.M. Peterlin. 2005. Sequential modifications in CIITA isoform 1 induced by LPS stimulate MHC class II transcription and connect innate and adaptive immunity.
156 Lenasi T, Peterlin BM, Dovc P. 2006 Distal regulation of alternative splicing by splicing enhancer in equine beta-casein intron 1. RNA. 2006 Mar;12(3):498-507. Epub 2006 Jan 23. 
 157  Peterlin BM.2006 Nef: out and in? Nat Immunol. 2006 Mar;7(3):229-30. No abstract available.  
 158 Costa LJ, Chen N, Lopes A, Aguiar RS, Tanuri A, Plemenitas A, Peterlin BM. 2006. Interactions between Nef and AIP1 proliferate multivesicular bodies and facilitate egress of HIV-1. Retrovirology. 2006 Jun 9;3:33 
 159 Peterlin BM, Price DH. 2006. Controlling the elongation phase of transcription with P-TEFb. Mol Cell. 2006 Aug 4;23(3):297-305. Review.  
 160 Kanazawa S, Ota S, Sekine C, Tada T, Otsuka T, Okamoto T, Sønderstrup G, Peterlin BM. 2006. Aberrant MHC class II expression in mouse joints leads to arthritis with extraarticular manifestations similar to rheumatoid arthritis. Proc Natl Acad Sci U S A. 2006 Sep 26;103(39):14465-70. Epub 2006 Sep 15.  
 161 Kohoutek J, Blazek D, Peterlin BM. 2006. Hexim1 sequesters positive transcription elongation factor b from the class II transactivator on MHC class II promoters. Proc Natl Acad Sci U S A. 2006 Nov 14;103(46):17349-54. Epub 2006 Nov 6.  
 162 Drozina G, Kohoutek J, Nishiya T, Peterlin BM. 2006. Sequential modifications in class II transactivator isoform 1 induced by lipopolysaccharide stimulate major histocompatibility complex class II transcription in macrophages. J Biol Chem. 2006 Dec 29;281(52):39963-70. Epub 2006 Nov 9.  
 163 Okeoma CM, Lovsin N, Peterlin BM, Ross SR.2007. APOBEC3 inhibits mouse mammary tumour virus replication in vivo. Nature. 2007 Feb 22;445(7130):927-30. Epub 2007 Jan 28.  
164 Barboric M, Yik JH, Czudnochowski N, Yang Z, Chen R, Contreras X, Geyer M, Matija Peterlin B, Zhou Q. 2007. Tat competes with HEXIM1 to increase the active pool of P-TEFb for HIV-1 transcription. Nucleic Acids Res. 2007;35(6):2003-12. Epub 2007 Mar 6.  
 165 Dames SA, Schönichen A, Schulte A, Barboric M, Peterlin BM, Grzesiek S, Geyer M. 2007. Structure of the Cyclin T binding domain of Hexim1 and molecular basis for its recognition of P-TEFb. Proc Natl Acad Sci U S A. 2007 Sep 4;104(36):14312-7. Epub 2007 Aug 27.  
166  Contreras X, Barboric M, Lenasi T, Peterlin BM. 2007. HMBA releases P-TEFb from HEXIM1 and 7SK snRNA via PI3K/Akt and activates HIV transcription. PLoS Pathog. 2007 Oct 12;3(10):1459-69 
 167 Oven I, Brdicková N, Kohoutek J, Vaupotic T, Narat M, Peterlin BM. 2007. AIRE recruits P-TEFb for transcriptional elongation of target genes in medullary thymic epithelial cells. Mol Cell Biol. 2007 Dec;27(24):8815-23. Epub 2007 Oct 15.  
168 Jiang H, Peterlin BM. 2008. Differential chromatin looping regulates CD4 expression in immature thymocytes. Mol Cell Biol. 2007 Dec;27(24):8815-23. Epub 2007 Oct 15. 
 169 Aguiar RS, Lovsin N, Tanuri A, Peterlin BM. 2008. Vpr.A3A chimera inhibits HIV replication. J Biol Chem. 2008 Feb 1;283(5):2518-25. Epub 2007 Dec 5.  
170 Aguiar RS, Peterlin BM. 2008. APOBEC3 proteins and reverse transcription. Virus Res. 2008 Jun;134(1-2):74-85. Epub 2008 Feb 11.  
 171 Blazek D, Peterlin BM. 2008. Tat-SIRT1 tango. Mol Cell. 2008 Mar 14;29(5):539-40
 172 Su MA, Giang K, Zumer K, Jiang H, Oven I, Rinn JL, Devoss JJ, Johannes KP, Lu W, Gardner J, Chang A, Bubulya P, Chang HY, Peterlin BM, Anderson MS. 2008. Mechanisms of an autoimmunity syndrome in mice caused by a dominant mutation in Aire. J Clin Invest. 2008 May;118(5):1712-26 
173 Lenasi T, Contreras X, Peterlin BM. Transcriptional interference antagonizes proviral gene expression to promote HIV latency. Cell Host Microbe. 2008 Aug 14;4(2):123-33. 

Contreras X, Schweneker M, Chen CS, McCune JM, Deeks SG, Martin J, Peterlin BM. Suberoylanilide hydroxamic acid reactivates HIV from latently infected cells. J Biol Chem. 2009 Mar 13;284(11):6782-9. Epub 2009 Jan 9. 


Low A, Okeoma CM, Lovsin N, de las Heras M, Taylor TH, Peterlin BM, Ross SR, Fan H. Enhanced replication and pathogenesis of Moloney murine leukemia virus in mice defective in the murine APOBEC3 gene. Virology. 2009 Mar 15;385(2):455-63. 


Okeoma CM, Low A, Bailis W, Fan HY, Peterlin BM, Ross SR. Induction of APOBEC3 in vivo causes increased restriction of retrovirus infection. J Virol. 2009 Apr;83(8):3486-95. Epub 2009 Jan 19. 


Kohoutek J, Li Q, Blazek D, Luo Z, Jiang H, Peterlin BM. Cyclin T2 is essential for mouse embryogenesis. Mol Cell Biol. 2009 Jun;29(12):3280-5. Epub 2009 Apr 13. 


Li Q, Peterlin BM. Genetic analysis of P-TEFb function via heterologous nucleic acid tethering systems. Methods. 2009 Aug;48(4):375-80. Epub 2009 May 3. 


Barboric M, Lenasi T, Chen H, Johansen EB, Guo S, Peterlin BM. 7SK snRNP/P-TEFb couples transcription elongation with alternative splicing and is essential for vertebrate development. Proc Natl Acad Sci U S A. 2009 May 12;106(19):7798-803. Epub 2009 Apr 27. 


Chen H, Contreras X, Yamaguchi Y, Handa H, Peterlin BM, Guo S. Repression of RNA polymerase II elongation in vivo is critically dependent on the C-terminus of Spt5. PLoS One. 2009 Sep 9;4(9):e6918. 


Jesus da Costa L, Lopes Dos Santos A, Mandic R, Shaw K, Santana de Aguiar R, Tanuri A, Luciw PA, Peterlin BM. Interactions between SIVNef, SIVGagPol and Alix correlate with viral replication and progression to AIDS in rhesus macaques. Virology. 2009 Nov 10;394(1):47-56. Epub 2009 Sep 11. 


Lovsin N, Peterlin BM. APOBEC3 proteins inhibit LINE-1 retrotransposition in the absence of ORF1p binding. Ann N Y Acad Sci. 2009 Oct;1178:268-75. 


Lenassi M, Cagney G, Liao M, Vaupotic T, Bartholomeeusen K, Cheng Y, Krogan NJ, Plemenitas A, Peterlin BM. HIV Nef is secreted in exosomes and triggers apoptosis in bystander CD4+ T cells. Traffic. 2010 Jan;11(1):110-22. Epub . 

184 Peterlin BMTranscription elongation takes central stage: the P-TEFb connection. Cell Cycle. 2010 Aug 1;9(15):2933-4. Epub 2010 Aug 1.  



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